Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs41302869 chr6:7250639 A/G 7.19E-5 491 32.4 27.57 24.27 KM Plot
PRAD rs4140837 chr7:123249257 A/T 2.08E-5 494 31.4 27.08 31.93 KM Plot
PRAD rs4142219 chr20:6083493 A/C 8.09E-7 489 31 28.87 31.77 KM Plot
PRAD rs41505354 chr4:185165405 G/T 1.83E-11 494 20.93 28.23 31.4 KM Plot
PRAD rs4273104 chr17:58049609 A/G 3.71E-7 494 18.2 31.22 30.8 KM Plot
PRAD rs4287005 chr9:72870601 G/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs4300885 chr2:47159082 C/T 6.12E-6 494 30.8 32.4 36.77 KM Plot
PRAD rs4314044 chr2:47168070 A/G 3.11E-6 491 30.8 32.4 36.77 KM Plot
PRAD rs4317855 chr1:31774197 C/T 8.48E-6 493 22.87 31.3 30.93 KM Plot
PRAD rs4323529 chr9:97377251 T/C 1.67E-5 485 17.07 25.67 32.43 KM Plot
PRAD rs4331293 chr15:67987801 A/G 3.14E-5 494 33.37 27.77 27.58 KM Plot
PRAD rs4332527 chr11:24232524 G/C 4.41E-14 488 31 31.27 13.52 KM Plot
PRAD rs4334074 chr12:9478921 T/C 0 484 13.87 26.13 31.37 KM Plot
PRAD rs4366773 chr17:58048447 C/T 0 482 30.8 31.13 4.87 KM Plot
PRAD rs4377360 chr2:178797182 A/G 4.13E-5 494 30.77 31.93 20.48 KM Plot